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A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
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Results for submission Resonance assignment of the first and second KH (hnRNP-K homology) domains of human poly(C)-binding protein-2 (PCBP2).

BMRB ID: 15049

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Graph for Resonance assignment of the first and second KH (hnRNP-K homology) domains of human poly(C)-binding protein-2 (PCBP2)

Lowest energy structure: S_0008_57_0001

RMSD against lowest energy structure for all residues

StructureScore
S_0008_57_0001.pdb2.1258
S_0009_485_0001.pdb2.1632
S_0002_174_0001.pdb7.5069
S_0006_108_0001.pdb1.7987
S_0011_142_0001.pdb2.3523
S_0008_259_0001.pdb3.7523
S_0001_104_0001.pdb2.0398
S_0018_462_0001.pdb2.1901
S_0009_19_0001.pdb2.1126
S_0001_266_0001.pdb2.3988
Averaged Ca-rmsd2.844 +/- 1.722

RMSD against lowest energy structure for residues 1-78, 81-81, 83-125, 131-138, 140-154

StructureScore
S_0008_57_0001.pdb1.8885
S_0009_485_0001.pdb1.8565
S_0002_174_0001.pdb5.8234
S_0006_108_0001.pdb1.4925
S_0011_142_0001.pdb1.9663
S_0008_259_0001.pdb3.3438
S_0001_104_0001.pdb1.9712
S_0018_462_0001.pdb2.0174
S_0009_19_0001.pdb1.7735
S_0001_266_0001.pdb1.9839
Averaged Ca-rmsd2.412 +/- 1.294

This entry was calculated with Rosetta version 3.5 and version 3.2 of the CS-Rosetta Toolbox.

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Citation information:

"Determination of solution structures of proteins up to 40 kDa using CS-Rosetta with sparse NMR data from deuterated samples" Oliver F. Lange; Paolo Rossi; Nikolaos G. Sgourakis; Yifan Song; Hsiau-Wei Lee; James M. Aramini; Asli Ertekin; Rong Xiao; Thomas B. Acton; Gaetano T. Montelione; David Baker; Proceedings of the National Academy of Sciences 109(27) 10873-10878 (2012) doi: 10.1073/pnas.1203013109

"De novo structure generation using chemical shifts for proteins with high-sequence identity but different folds," Yang Shen; Philip N. Bryan; Yanan He; John Orban; David Baker; Ad Bax; Protein Science 19, 349-356 (2010) doi: 10.1002/pro.303

"De novo protein structure generation from incomplete chemical shift assignments," Yang Shen; Robert Vernon; David Baker; Ad Bax; J. Biomol. NMR 43, 63-78 (2009) doi: 10.1007/s10858-008-9288-5

"Consistent blind protein structure generation from NMR chemical shift data," Yang Shen; Oliver Lange; Frank Delaglio; Paolo Rossi; James M. Aramini; Gaohua Liu; Alexander Eletsky; Yibing Wu; Kiran K. Singarapu; Alexander Lemak; Alexandr Ignatchenko; Cheryl H. Arrowsmith; Thomas Szyperski; Gaetano T. Montelione; David Baker; Ad Bax; Proceedings of the National Academy of Sciences 105(12) 4685-4690 (2008) doi: 10.1073/pnas.0800256105