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A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
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Results for submission Structure for the N-terminus of chromosomal replication initiation protein dnaA from M. genitalium.

BMRB ID: 15055

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Graph for Structure for the N-terminus of chromosomal replication initiation protein dnaA from M. genitalium

Lowest energy structure: S_0021_40_0001

RMSD against lowest energy structure for all residues

StructureScore
S_0021_40_0001.pdb2.1926
S_0007_254_0001.pdb1.1790
S_0017_136_0001.pdb2.0451
S_0012_274_0001.pdb2.4656
S_0009_249_0001.pdb2.7834
S_0006_255_0001.pdb1.6938
S_0025_117_0001.pdb1.9288
S_0011_6_0001.pdb3.1157
S_0004_209_0001.pdb2.9276
S_0003_192_0001.pdb2.1468
Averaged Ca-rmsd2.248 +/- 0.592

RMSD against lowest energy structure for residues 1-89

StructureScore
S_0021_40_0001.pdb2.1856
S_0007_254_0001.pdb1.1798
S_0017_136_0001.pdb2.0502
S_0012_274_0001.pdb2.3058
S_0009_249_0001.pdb2.7526
S_0006_255_0001.pdb1.7009
S_0025_117_0001.pdb1.9317
S_0011_6_0001.pdb3.1005
S_0004_209_0001.pdb2.8345
S_0003_192_0001.pdb2.1270
Averaged Ca-rmsd2.217 +/- 0.569

This entry was calculated with Rosetta version 3.5 and version 3.2 of the CS-Rosetta Toolbox.

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Citation information:

"Determination of solution structures of proteins up to 40 kDa using CS-Rosetta with sparse NMR data from deuterated samples" Oliver F. Lange; Paolo Rossi; Nikolaos G. Sgourakis; Yifan Song; Hsiau-Wei Lee; James M. Aramini; Asli Ertekin; Rong Xiao; Thomas B. Acton; Gaetano T. Montelione; David Baker; Proceedings of the National Academy of Sciences 109(27) 10873-10878 (2012) doi: 10.1073/pnas.1203013109

"De novo structure generation using chemical shifts for proteins with high-sequence identity but different folds," Yang Shen; Philip N. Bryan; Yanan He; John Orban; David Baker; Ad Bax; Protein Science 19, 349-356 (2010) doi: 10.1002/pro.303

"De novo protein structure generation from incomplete chemical shift assignments," Yang Shen; Robert Vernon; David Baker; Ad Bax; J. Biomol. NMR 43, 63-78 (2009) doi: 10.1007/s10858-008-9288-5

"Consistent blind protein structure generation from NMR chemical shift data," Yang Shen; Oliver Lange; Frank Delaglio; Paolo Rossi; James M. Aramini; Gaohua Liu; Alexander Eletsky; Yibing Wu; Kiran K. Singarapu; Alexander Lemak; Alexandr Ignatchenko; Cheryl H. Arrowsmith; Thomas Szyperski; Gaetano T. Montelione; David Baker; Ad Bax; Proceedings of the National Academy of Sciences 105(12) 4685-4690 (2008) doi: 10.1073/pnas.0800256105