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Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
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Results for submission NMR structure of p1 from the infectious bursal disease virus (IBDV) in dodecylphosphocholin (DPC)..

BMRB ID: 15108

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Graph for NMR structure of p1 from the infectious bursal disease virus (IBDV) in dodecylphosphocholin (DPC).

Lowest energy structure: S_07079

RMSD against lowest energy structure for all residues

StructureScore
S_07079.pdb1.7889
S_02869.pdb2.9482
S_09402.pdb2.0069
S_09035.pdb3.5339
S_09997.pdb2.6425
S_04559.pdb2.8651
S_03618.pdb1.9689
S_09906.pdb3.1590
S_03022.pdb2.8534
S_05432.pdb2.2669
Averaged Ca-rmsd2.603 +/- 0.574

RMSD against lowest energy structure for residues 2-42

StructureScore
S_07079.pdb1.2642
S_02869.pdb1.5380
S_09402.pdb1.1453
S_09035.pdb2.6445
S_09997.pdb1.2396
S_04559.pdb1.7476
S_03618.pdb1.4654
S_09906.pdb2.1553
S_03022.pdb2.0992
S_05432.pdb1.9116
Averaged Ca-rmsd1.721 +/- 0.482

This entry was calculated with Rosetta version 3.5 and version 3.2 of the CS-Rosetta Toolbox.

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Citation information:

"Determination of solution structures of proteins up to 40 kDa using CS-Rosetta with sparse NMR data from deuterated samples" Oliver F. Lange; Paolo Rossi; Nikolaos G. Sgourakis; Yifan Song; Hsiau-Wei Lee; James M. Aramini; Asli Ertekin; Rong Xiao; Thomas B. Acton; Gaetano T. Montelione; David Baker; Proceedings of the National Academy of Sciences 109(27) 10873-10878 (2012) doi: 10.1073/pnas.1203013109

"De novo structure generation using chemical shifts for proteins with high-sequence identity but different folds," Yang Shen; Philip N. Bryan; Yanan He; John Orban; David Baker; Ad Bax; Protein Science 19, 349-356 (2010) doi: 10.1002/pro.303

"De novo protein structure generation from incomplete chemical shift assignments," Yang Shen; Robert Vernon; David Baker; Ad Bax; J. Biomol. NMR 43, 63-78 (2009) doi: 10.1007/s10858-008-9288-5

"Consistent blind protein structure generation from NMR chemical shift data," Yang Shen; Oliver Lange; Frank Delaglio; Paolo Rossi; James M. Aramini; Gaohua Liu; Alexander Eletsky; Yibing Wu; Kiran K. Singarapu; Alexander Lemak; Alexandr Ignatchenko; Cheryl H. Arrowsmith; Thomas Szyperski; Gaetano T. Montelione; David Baker; Ad Bax; Proceedings of the National Academy of Sciences 105(12) 4685-4690 (2008) doi: 10.1073/pnas.0800256105