BMRB Logo

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
Member of WWPDB

This page made possible by:

CHTC Logo OSG Logo CS-Rosetta Logo

CS-Rosetta Results Access

Results for submission Lipid Free Mouse Apolipoprotein-AI(mAI216)NMR Backbone Assignment.

BMRB ID: 15091

These results are interactive!

Clicking on an image will enlarge it. Clicking again will open it in a Jmol viewer. Click the downward pointing arrow to shrink an image. You can also enlarge the graph and make it interactive by clicking twice. Hold down the right mouse button and drag to zoom in on the interactive graph. Left click on a structure in the graph to pull it up in the Jmol viewer. This enables you to explore any structure in the Jmol viewer.

Graph for Lipid Free Mouse Apolipoprotein-AI(mAI216)NMR Backbone Assignment

Lowest energy structure: S_05996

RMSD against lowest energy structure for all residues

StructureScore
S_05996.pdb11.5205
S_04295.pdb17.6446
S_09995.pdb15.5032
S_08266.pdb15.4999
S_03059.pdb16.8398
S_06669.pdb15.1133
S_06357.pdb13.4310
S_06049.pdb14.6661
S_09783.pdb14.0720
S_07618.pdb15.7733
Averaged Ca-rmsd15.006 +/- 1.733

RMSD against lowest energy structure for residues 174-186

StructureScore
S_05996.pdb2.7848
S_04295.pdb3.0448
S_09995.pdb2.8338
S_08266.pdb2.8688
S_03059.pdb2.8470
S_06669.pdb2.7627
S_06357.pdb3.2464
S_06049.pdb2.9421
S_09783.pdb3.2070
S_07618.pdb2.9920
Averaged Ca-rmsd2.953 +/- 0.169

This entry was calculated with Rosetta version 3.5 and version 3.2 of the CS-Rosetta Toolbox.

To have this entry show up in your list of submitted entries please click here.

Please contact us if you encounter any issues.

Citation information:

"Determination of solution structures of proteins up to 40 kDa using CS-Rosetta with sparse NMR data from deuterated samples" Oliver F. Lange; Paolo Rossi; Nikolaos G. Sgourakis; Yifan Song; Hsiau-Wei Lee; James M. Aramini; Asli Ertekin; Rong Xiao; Thomas B. Acton; Gaetano T. Montelione; David Baker; Proceedings of the National Academy of Sciences 109(27) 10873-10878 (2012) doi: 10.1073/pnas.1203013109

"De novo structure generation using chemical shifts for proteins with high-sequence identity but different folds," Yang Shen; Philip N. Bryan; Yanan He; John Orban; David Baker; Ad Bax; Protein Science 19, 349-356 (2010) doi: 10.1002/pro.303

"De novo protein structure generation from incomplete chemical shift assignments," Yang Shen; Robert Vernon; David Baker; Ad Bax; J. Biomol. NMR 43, 63-78 (2009) doi: 10.1007/s10858-008-9288-5

"Consistent blind protein structure generation from NMR chemical shift data," Yang Shen; Oliver Lange; Frank Delaglio; Paolo Rossi; James M. Aramini; Gaohua Liu; Alexander Eletsky; Yibing Wu; Kiran K. Singarapu; Alexander Lemak; Alexandr Ignatchenko; Cheryl H. Arrowsmith; Thomas Szyperski; Gaetano T. Montelione; David Baker; Ad Bax; Proceedings of the National Academy of Sciences 105(12) 4685-4690 (2008) doi: 10.1073/pnas.0800256105