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Results for submission Merozoite surface protein 2 (MSP2) of Plasmodium falciparum: expression, structure and amyloid formation of the conserved N-terminal domain.

BMRB ID: 15075

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Graph for Merozoite surface protein 2 (MSP2) of Plasmodium falciparum: expression, structure and amyloid formation of the conserved N-terminal domain

It appears this run did not converge (based on the residues marked non-flexible). While the best predicted structure is displayed, the lack of convergence means that this structure is unlikely to resemble the actual structure. Furthermore, it is not necessarily representative of the ensemble of structures formed.

Lowest energy structure: S_00009

RMSD against lowest energy structure for all residues

Structure Score
S_00009.pdb 1.5540
S_07391.pdb 1.5055
S_09008.pdb 3.2639
S_00563.pdb 1.6259
S_08918.pdb 2.3111
S_07512.pdb 2.1475
S_05519.pdb 1.5829
S_08336.pdb 1.5559
S_06665.pdb 2.1759
S_06339.pdb 2.5141
Averaged Ca-rmsd 2.024 +/- 0.574

RMSD against lowest energy structure for residues 2-28

Structure Score
S_00009.pdb 1.5289
S_07391.pdb 1.5172
S_09008.pdb 3.0825
S_00563.pdb 1.6067
S_08918.pdb 2.3385
S_07512.pdb 2.1576
S_05519.pdb 1.5737
S_08336.pdb 1.5760
S_06665.pdb 2.2062
S_06339.pdb 2.4498
Averaged Ca-rmsd 2.004 +/- 0.530

This entry was calculated with Rosetta version 3.5 and version 3.2 of the CS-Rosetta Toolbox.

The flexible tails of this protein were automatically trimmed by the server. This means that the results you see might not have the same residue sequence as the data you submitted.

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Citation information:

"Determination of solution structures of proteins up to 40 kDa using CS-Rosetta with sparse NMR data from deuterated samples" Oliver F. Lange; Paolo Rossi; Nikolaos G. Sgourakis; Yifan Song; Hsiau-Wei Lee; James M. Aramini; Asli Ertekin; Rong Xiao; Thomas B. Acton; Gaetano T. Montelione; David Baker; Proceedings of the National Academy of Sciences 109(27) 10873-10878 (2012) doi: 10.1073/pnas.1203013109

"De novo structure generation using chemical shifts for proteins with high-sequence identity but different folds," Yang Shen; Philip N. Bryan; Yanan He; John Orban; David Baker; Ad Bax; Protein Science 19, 349-356 (2010) doi: 10.1002/pro.303

"De novo protein structure generation from incomplete chemical shift assignments," Yang Shen; Robert Vernon; David Baker; Ad Bax; J. Biomol. NMR 43, 63-78 (2009) doi: 10.1007/s10858-008-9288-5

"Consistent blind protein structure generation from NMR chemical shift data," Yang Shen; Oliver Lange; Frank Delaglio; Paolo Rossi; James M. Aramini; Gaohua Liu; Alexander Eletsky; Yibing Wu; Kiran K. Singarapu; Alexander Lemak; Alexandr Ignatchenko; Cheryl H. Arrowsmith; Thomas Szyperski; Gaetano T. Montelione; David Baker; Ad Bax; Proceedings of the National Academy of Sciences 105(12) 4685-4690 (2008) doi: 10.1073/pnas.0800256105

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