Biological Magnetic Resonance Data Bank

A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
Member of WWPDB

CS-Rosetta Results Access

Results for submission Solution NMR Structure of CAPER RRM2 Domain. Northeast Structural Genomics Target HR4730A..

BMRB ID: 15343

These results are interactive!

Clicking on an image will enlarge it. Clicking again will open it in a Jmol viewer. Click the downward pointing arrow to shrink an image. You can also enlarge the graph and make it interactive by clicking twice. Hold down the right mouse button and drag to zoom in on the interactive graph. Left click on a structure in the graph to pull it up in the Jmol viewer. This enables you to explore any structure in the Jmol viewer.

Graph for Solution NMR Structure of CAPER RRM2 Domain. Northeast Structural Genomics Target HR4730A.

This run appears to have converged (based on the residues marked non-flexible). That means that the results may be a meaningful prediction of the real structure. Please validate the structure against your experimental data.

Lowest energy structure: S_0007_150_0001

RMSD against lowest energy structure for all residues

Structure Score
S_0007_150_0001.pdb 0.5521
S_0027_328_0001.pdb 0.8155
S_0005_310_0001.pdb 0.6865
S_0012_344_0001.pdb 1.3767
S_0022_84_0001.pdb 0.9930
S_0025_256_0001.pdb 0.8165
S_0020_81_0001.pdb 0.6607
S_0014_18_0001.pdb 0.6778
S_0017_195_0001.pdb 0.5683
S_0022_296_0001.pdb 0.7730
Averaged Ca-rmsd 0.792 +/- 0.243

RMSD against lowest energy structure for residues 1-77

Structure Score
S_0007_150_0001.pdb 0.5531
S_0027_328_0001.pdb 0.8119
S_0005_310_0001.pdb 0.6881
S_0012_344_0001.pdb 1.3730
S_0022_84_0001.pdb 0.9984
S_0025_256_0001.pdb 0.8180
S_0020_81_0001.pdb 0.6608
S_0014_18_0001.pdb 0.6787
S_0017_195_0001.pdb 0.5639
S_0022_296_0001.pdb 0.7726
Averaged Ca-rmsd 0.792 +/- 0.243

This entry was calculated with Rosetta version 3.5 and version 3.2 of the CS-Rosetta Toolbox.

The flexible tails of this protein were automatically trimmed by the server. This means that the results you see might not have the same residue sequence as the data you submitted.

Download results for best 10 structures Download all results

To have this entry show up in your list of submitted entries please click here.

Please contact us if you encounter any issues.

Citation information:

"Determination of solution structures of proteins up to 40 kDa using CS-Rosetta with sparse NMR data from deuterated samples" Oliver F. Lange; Paolo Rossi; Nikolaos G. Sgourakis; Yifan Song; Hsiau-Wei Lee; James M. Aramini; Asli Ertekin; Rong Xiao; Thomas B. Acton; Gaetano T. Montelione; David Baker; Proceedings of the National Academy of Sciences 109(27) 10873-10878 (2012) doi: 10.1073/pnas.1203013109

"De novo structure generation using chemical shifts for proteins with high-sequence identity but different folds," Yang Shen; Philip N. Bryan; Yanan He; John Orban; David Baker; Ad Bax; Protein Science 19, 349-356 (2010) doi: 10.1002/pro.303

"De novo protein structure generation from incomplete chemical shift assignments," Yang Shen; Robert Vernon; David Baker; Ad Bax; J. Biomol. NMR 43, 63-78 (2009) doi: 10.1007/s10858-008-9288-5

"Consistent blind protein structure generation from NMR chemical shift data," Yang Shen; Oliver Lange; Frank Delaglio; Paolo Rossi; James M. Aramini; Gaohua Liu; Alexander Eletsky; Yibing Wu; Kiran K. Singarapu; Alexander Lemak; Alexandr Ignatchenko; Cheryl H. Arrowsmith; Thomas Szyperski; Gaetano T. Montelione; David Baker; Ad Bax; Proceedings of the National Academy of Sciences 105(12) 4685-4690 (2008) doi: 10.1073/pnas.0800256105

This service made possible by:

CHTC Logo OSG Logo CS-Rosetta Logo