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Results for submission C-terminal domain of ORF1p from mouse LINE-1.

BMRB ID: 15325

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Graph for C-terminal domain of ORF1p from mouse LINE-1

This run appears to have converged (based on the residues marked non-flexible). That means that the results may be a meaningful prediction of the real structure. Please validate the structure against your experimental data.

Lowest energy structure: S_0025_222_0001

RMSD against lowest energy structure for all residues

Structure Score
S_0025_222_0001.pdb 1.1582
S_0005_40_0001.pdb 1.2814
S_0007_220_0001.pdb 1.1094
S_0001_160_0001.pdb 0.9186
S_0008_107_0001.pdb 1.4772
S_0020_291_0001.pdb 0.8961
S_0021_186_0001.pdb 2.3543
S_0027_261_0001.pdb 1.3411
S_0012_306_0001.pdb 1.9732
S_0014_163_0001.pdb 0.8772
Averaged Ca-rmsd 1.339 +/- 0.486

RMSD against lowest energy structure for residues 1-67

Structure Score
S_0025_222_0001.pdb 1.1222
S_0005_40_0001.pdb 1.2209
S_0007_220_0001.pdb 1.1001
S_0001_160_0001.pdb 0.9023
S_0008_107_0001.pdb 1.4042
S_0020_291_0001.pdb 0.8560
S_0021_186_0001.pdb 2.3675
S_0027_261_0001.pdb 1.2923
S_0012_306_0001.pdb 1.8659
S_0014_163_0001.pdb 0.8233
Averaged Ca-rmsd 1.295 +/- 0.487

This entry was calculated with Rosetta version 3.5 and version 3.2 of the CS-Rosetta Toolbox.

The flexible tails of this protein were automatically trimmed by the server. This means that the results you see might not have the same residue sequence as the data you submitted.

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Citation information:

"Determination of solution structures of proteins up to 40 kDa using CS-Rosetta with sparse NMR data from deuterated samples" Oliver F. Lange; Paolo Rossi; Nikolaos G. Sgourakis; Yifan Song; Hsiau-Wei Lee; James M. Aramini; Asli Ertekin; Rong Xiao; Thomas B. Acton; Gaetano T. Montelione; David Baker; Proceedings of the National Academy of Sciences 109(27) 10873-10878 (2012) doi: 10.1073/pnas.1203013109

"De novo structure generation using chemical shifts for proteins with high-sequence identity but different folds," Yang Shen; Philip N. Bryan; Yanan He; John Orban; David Baker; Ad Bax; Protein Science 19, 349-356 (2010) doi: 10.1002/pro.303

"De novo protein structure generation from incomplete chemical shift assignments," Yang Shen; Robert Vernon; David Baker; Ad Bax; J. Biomol. NMR 43, 63-78 (2009) doi: 10.1007/s10858-008-9288-5

"Consistent blind protein structure generation from NMR chemical shift data," Yang Shen; Oliver Lange; Frank Delaglio; Paolo Rossi; James M. Aramini; Gaohua Liu; Alexander Eletsky; Yibing Wu; Kiran K. Singarapu; Alexander Lemak; Alexandr Ignatchenko; Cheryl H. Arrowsmith; Thomas Szyperski; Gaetano T. Montelione; David Baker; Ad Bax; Proceedings of the National Academy of Sciences 105(12) 4685-4690 (2008) doi: 10.1073/pnas.0800256105

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