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Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
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Results for submission Solution structure of dynein light chain 2A.

BMRB ID: 15142

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Graph for Solution structure of dynein light chain 2A

This run appears to have converged (based on the residues marked non-flexible). That means that the results may be a meaningful prediction of the real structure. Please validate the structure against your experimental data.

Lowest energy structure: S_05730

RMSD against lowest energy structure for all residues

Structure Score
S_05730.pdb 1.4465
S_00418.pdb 1.8504
S_07037.pdb 1.2606
S_03229.pdb 1.6750
S_08598.pdb 1.2028
S_00046.pdb 1.7306
S_04381.pdb 1.9198
S_09187.pdb 1.8925
S_04831.pdb 2.0469
S_04986.pdb 1.6796
Averaged Ca-rmsd 1.670 +/- 0.284

RMSD against lowest energy structure for residues 1-100

Structure Score
S_05730.pdb 1.3057
S_00418.pdb 1.6952
S_07037.pdb 1.1762
S_03229.pdb 1.6191
S_08598.pdb 1.0787
S_00046.pdb 1.6418
S_04381.pdb 1.9034
S_09187.pdb 1.7486
S_04831.pdb 1.9714
S_04986.pdb 1.5916
Averaged Ca-rmsd 1.573 +/- 0.297

This entry was calculated with Rosetta version 3.5 and version 3.2 of the CS-Rosetta Toolbox.

The flexible tails of this protein were automatically trimmed by the server. This means that the results you see might not have the same residue sequence as the data you submitted.

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Citation information:

"Determination of solution structures of proteins up to 40 kDa using CS-Rosetta with sparse NMR data from deuterated samples" Oliver F. Lange; Paolo Rossi; Nikolaos G. Sgourakis; Yifan Song; Hsiau-Wei Lee; James M. Aramini; Asli Ertekin; Rong Xiao; Thomas B. Acton; Gaetano T. Montelione; David Baker; Proceedings of the National Academy of Sciences 109(27) 10873-10878 (2012) doi: 10.1073/pnas.1203013109

"De novo structure generation using chemical shifts for proteins with high-sequence identity but different folds," Yang Shen; Philip N. Bryan; Yanan He; John Orban; David Baker; Ad Bax; Protein Science 19, 349-356 (2010) doi: 10.1002/pro.303

"De novo protein structure generation from incomplete chemical shift assignments," Yang Shen; Robert Vernon; David Baker; Ad Bax; J. Biomol. NMR 43, 63-78 (2009) doi: 10.1007/s10858-008-9288-5

"Consistent blind protein structure generation from NMR chemical shift data," Yang Shen; Oliver Lange; Frank Delaglio; Paolo Rossi; James M. Aramini; Gaohua Liu; Alexander Eletsky; Yibing Wu; Kiran K. Singarapu; Alexander Lemak; Alexandr Ignatchenko; Cheryl H. Arrowsmith; Thomas Szyperski; Gaetano T. Montelione; David Baker; Ad Bax; Proceedings of the National Academy of Sciences 105(12) 4685-4690 (2008) doi: 10.1073/pnas.0800256105

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