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Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
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Results for submission Embryonic Neural Inducing Factor Churchill is not a DNA-Binding Zinc Finger Protein: Solution Structure Reveals a Solvent-Exposed Beta-Sheet and Zinc Binuclear Cluster.

BMRB ID: 15208

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Graph for Embryonic Neural Inducing Factor Churchill is not a DNA-Binding Zinc Finger Protein: Solution Structure Reveals a Solvent-Exposed Beta-Sheet and Zinc Binuclear Cluster

This run appears to have converged (based on the residues marked non-flexible). That means that the results may be a meaningful prediction of the real structure. Please validate the structure against your experimental data.

Lowest energy structure: S_0019_195_0001

RMSD against lowest energy structure for all residues

Structure Score
S_0019_195_0001.pdb 5.1656
S_0004_102_0001.pdb 7.3258
S_0006_343_0001.pdb 4.9915
S_0003_22_0001.pdb 8.2823
S_0009_353_0001.pdb 6.9246
S_0021_339_0001.pdb 5.3254
S_0020_216_0001.pdb 5.3862
S_0010_294_0001.pdb 7.5310
S_0023_204_0001.pdb 7.2134
S_0003_12_0001.pdb 5.0569
Averaged Ca-rmsd 6.320 +/- 1.249

RMSD against lowest energy structure for residues 35-98

Structure Score
S_0019_195_0001.pdb 1.3835
S_0004_102_0001.pdb 2.1429
S_0006_343_0001.pdb 1.7207
S_0003_22_0001.pdb 2.5075
S_0009_353_0001.pdb 2.0987
S_0021_339_0001.pdb 2.3338
S_0020_216_0001.pdb 1.3933
S_0010_294_0001.pdb 1.3064
S_0023_204_0001.pdb 1.7268
S_0003_12_0001.pdb 1.6486
Averaged Ca-rmsd 1.826 +/- 0.422

This entry was calculated with Rosetta version 3.5 and version 3.2 of the CS-Rosetta Toolbox.

The flexible tails of this protein were automatically trimmed by the server. This means that the results you see might not have the same residue sequence as the data you submitted.

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Citation information:

"Determination of solution structures of proteins up to 40 kDa using CS-Rosetta with sparse NMR data from deuterated samples" Oliver F. Lange; Paolo Rossi; Nikolaos G. Sgourakis; Yifan Song; Hsiau-Wei Lee; James M. Aramini; Asli Ertekin; Rong Xiao; Thomas B. Acton; Gaetano T. Montelione; David Baker; Proceedings of the National Academy of Sciences 109(27) 10873-10878 (2012) doi: 10.1073/pnas.1203013109

"De novo structure generation using chemical shifts for proteins with high-sequence identity but different folds," Yang Shen; Philip N. Bryan; Yanan He; John Orban; David Baker; Ad Bax; Protein Science 19, 349-356 (2010) doi: 10.1002/pro.303

"De novo protein structure generation from incomplete chemical shift assignments," Yang Shen; Robert Vernon; David Baker; Ad Bax; J. Biomol. NMR 43, 63-78 (2009) doi: 10.1007/s10858-008-9288-5

"Consistent blind protein structure generation from NMR chemical shift data," Yang Shen; Oliver Lange; Frank Delaglio; Paolo Rossi; James M. Aramini; Gaohua Liu; Alexander Eletsky; Yibing Wu; Kiran K. Singarapu; Alexander Lemak; Alexandr Ignatchenko; Cheryl H. Arrowsmith; Thomas Szyperski; Gaetano T. Montelione; David Baker; Ad Bax; Proceedings of the National Academy of Sciences 105(12) 4685-4690 (2008) doi: 10.1073/pnas.0800256105

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