Biological Magnetic Resonance Data Bank

A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
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Results for submission Solution Structure of Protein HP0495 from H. pylori; Northeast structural genomics consortium target PT2; Ontario Centre for Structural Proteomics target HP0488.

BMRB ID: 15190

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Graph for Solution Structure of Protein HP0495 from H. pylori; Northeast structural genomics consortium target PT2; Ontario Centre for Structural Proteomics target HP0488

This run appears to have converged (based on the residues marked non-flexible). That means that the results may be a meaningful prediction of the real structure. Please validate the structure against your experimental data.

Lowest energy structure: S_0005_94_0001

RMSD against lowest energy structure for all residues

Structure Score
S_0005_94_0001.pdb 1.0100
S_0023_211_0001.pdb 1.0980
S_0023_326_0001.pdb 0.8484
S_0027_17_0001.pdb 4.0637
S_0026_70_0001.pdb 1.2424
S_0015_147_0001.pdb 1.5121
S_0028_137_0001.pdb 1.2286
S_0024_32_0001.pdb 1.8961
S_0004_57_0001.pdb 1.3095
S_0017_145_0001.pdb 1.2630
Averaged Ca-rmsd 1.547 +/- 0.929

RMSD against lowest energy structure for residues 3-79

Structure Score
S_0005_94_0001.pdb 0.7856
S_0023_211_0001.pdb 0.8006
S_0023_326_0001.pdb 0.6142
S_0027_17_0001.pdb 3.1767
S_0026_70_0001.pdb 1.1139
S_0015_147_0001.pdb 1.1312
S_0028_137_0001.pdb 1.1159
S_0024_32_0001.pdb 1.7207
S_0004_57_0001.pdb 0.9106
S_0017_145_0001.pdb 1.0027
Averaged Ca-rmsd 1.237 +/- 0.744

This entry was calculated with Rosetta version 3.5 and version 3.2 of the CS-Rosetta Toolbox.

The flexible tails of this protein were automatically trimmed by the server. This means that the results you see might not have the same residue sequence as the data you submitted.

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Citation information:

"Determination of solution structures of proteins up to 40 kDa using CS-Rosetta with sparse NMR data from deuterated samples" Oliver F. Lange; Paolo Rossi; Nikolaos G. Sgourakis; Yifan Song; Hsiau-Wei Lee; James M. Aramini; Asli Ertekin; Rong Xiao; Thomas B. Acton; Gaetano T. Montelione; David Baker; Proceedings of the National Academy of Sciences 109(27) 10873-10878 (2012) doi: 10.1073/pnas.1203013109

"De novo structure generation using chemical shifts for proteins with high-sequence identity but different folds," Yang Shen; Philip N. Bryan; Yanan He; John Orban; David Baker; Ad Bax; Protein Science 19, 349-356 (2010) doi: 10.1002/pro.303

"De novo protein structure generation from incomplete chemical shift assignments," Yang Shen; Robert Vernon; David Baker; Ad Bax; J. Biomol. NMR 43, 63-78 (2009) doi: 10.1007/s10858-008-9288-5

"Consistent blind protein structure generation from NMR chemical shift data," Yang Shen; Oliver Lange; Frank Delaglio; Paolo Rossi; James M. Aramini; Gaohua Liu; Alexander Eletsky; Yibing Wu; Kiran K. Singarapu; Alexander Lemak; Alexandr Ignatchenko; Cheryl H. Arrowsmith; Thomas Szyperski; Gaetano T. Montelione; David Baker; Ad Bax; Proceedings of the National Academy of Sciences 105(12) 4685-4690 (2008) doi: 10.1073/pnas.0800256105

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