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Results for submission Solution Structure of the Ubiquitin-Binding Zinc Finger (UBZ) Domain of the Human DNA Y-Polymerase Eta.

BMRB ID: 15160

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Graph for Solution Structure of the Ubiquitin-Binding Zinc Finger (UBZ) Domain of the Human DNA Y-Polymerase Eta

It appears this run did not converge (based on the residues marked non-flexible). While the best predicted structure is displayed, the lack of convergence means that this structure is unlikely to resemble the actual structure. Furthermore, it is not necessarily representative of the ensemble of structures formed.

Lowest energy structure: S_0015_44_0001

RMSD against lowest energy structure for all residues

Structure Score
S_0015_44_0001.pdb 2.2681
S_0035_108_0001.pdb 2.2662
S_0007_225_0001.pdb 2.3109
S_0022_31_0001.pdb 1.9668
S_0027_198_0001.pdb 3.2994
S_0034_138_0001.pdb 2.2629
S_0019_137_0001.pdb 4.7017
S_0002_86_0001.pdb 4.6611
S_0003_183_0001.pdb 2.9278
S_0003_199_0001.pdb 4.6058
Averaged Ca-rmsd 3.127 +/- 1.122

RMSD against lowest energy structure for residues 2-4, 10-28

Structure Score
S_0015_44_0001.pdb 2.0375
S_0035_108_0001.pdb 1.9672
S_0007_225_0001.pdb 2.1925
S_0022_31_0001.pdb 1.8270
S_0027_198_0001.pdb 2.6713
S_0034_138_0001.pdb 1.9628
S_0019_137_0001.pdb 3.8659
S_0002_86_0001.pdb 3.8625
S_0003_183_0001.pdb 2.5095
S_0003_199_0001.pdb 3.8026
Averaged Ca-rmsd 2.670 +/- 0.849

This entry was calculated with Rosetta version 3.5 and version 3.2 of the CS-Rosetta Toolbox.

The flexible tails of this protein were automatically trimmed by the server. This means that the results you see might not have the same residue sequence as the data you submitted.

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Citation information:

"Determination of solution structures of proteins up to 40 kDa using CS-Rosetta with sparse NMR data from deuterated samples" Oliver F. Lange; Paolo Rossi; Nikolaos G. Sgourakis; Yifan Song; Hsiau-Wei Lee; James M. Aramini; Asli Ertekin; Rong Xiao; Thomas B. Acton; Gaetano T. Montelione; David Baker; Proceedings of the National Academy of Sciences 109(27) 10873-10878 (2012) doi: 10.1073/pnas.1203013109

"De novo structure generation using chemical shifts for proteins with high-sequence identity but different folds," Yang Shen; Philip N. Bryan; Yanan He; John Orban; David Baker; Ad Bax; Protein Science 19, 349-356 (2010) doi: 10.1002/pro.303

"De novo protein structure generation from incomplete chemical shift assignments," Yang Shen; Robert Vernon; David Baker; Ad Bax; J. Biomol. NMR 43, 63-78 (2009) doi: 10.1007/s10858-008-9288-5

"Consistent blind protein structure generation from NMR chemical shift data," Yang Shen; Oliver Lange; Frank Delaglio; Paolo Rossi; James M. Aramini; Gaohua Liu; Alexander Eletsky; Yibing Wu; Kiran K. Singarapu; Alexander Lemak; Alexandr Ignatchenko; Cheryl H. Arrowsmith; Thomas Szyperski; Gaetano T. Montelione; David Baker; Ad Bax; Proceedings of the National Academy of Sciences 105(12) 4685-4690 (2008) doi: 10.1073/pnas.0800256105

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